RESOURCES

Code, data, and notes.

A loose collection of things I've built or written that might be useful to other people — small tools, research code released alongside papers, a couple of datasets, and a few notes.

§ 01 — Tools

Tools.

Small utilities I've built for my own workflow that happen to be useful to other people too.

  • TERMINAL
    TODO list

    A customised version of the Todo.txt utility — keep your to-do list directly from the terminal.

    GITHUB ↗
  • TELEGRAM
    Reminders Bot

    A small Telegram bot that sends scheduled reminders. I use it to nudge my students about deadlines.

    GITHUB ↗
  • TELEGRAM
    Memes Bot

    A Telegram bot that drops random memes I keep handy for the Computational Physics class.

    GITHUB ↗

§ 02 — Data

Data.

  • NETWORKS
    Hospital networks

    Network data used in Assessing the risk of spatial spreading of diseases in hospitals (Front. Phys., 2022).

    GITHUB ↗

§ 03 — Code

Research code.

Mostly research code released alongside papers, grouped by language. Use at your own risk — much of it was written under deadline.

  • C
    COVID-19 modelling

    Baseline scenario from Modelling the impact of testing, contact tracing and household quarantine on second waves of COVID-19 (Nat. Hum. Behav., 2020) and the PNAS 2022 follow-up.

    GITHUB ↗
  • C · Python
    Economy & COVID-19

    Code for the epidemic (C) + economic (Python) model from The unequal effects of the health–economy trade-off during the COVID-19 pandemic (Nat. Hum. Behav., 2023).

    ZENODO ↗
  • C
    SIR on a network — Gillespie

    Quick-and-dirty SIR simulations on a network using the Gillespie algorithm.

    GITHUB ↗
  • Python
    Hospitalisation dynamics

    Code from Unraveling the COVID-19 hospitalisation dynamics in Spain using Bayesian inference (BMC Med. Res. Methodol., 2023).

    GITHUB ↗
  • Python
    Transfer entropy & epidemics

    Code from Informational approach to uncover the age-group interactions in epidemic spreading from macro analysis (Phys. Rev. E, 2024).

    GITHUB ↗
  • Python
    Worm co-propagation — Gillespie

    Co-propagation of two worms in a network via Gillespie, used in Dynamics of defensive and malicious worm co-propagation across networked systems (Chaos Soliton. Fract., 2025).

    GITHUB ↗
  • R
    Thesis ggplot2 scripts

    The R scripts that produced the plots in my Ph.D. thesis. Examples included — feel free to crib.

    GITHUB ↗

§ 04 — Other

Other things.